STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE39178.1Protein of unknown function. (125 aa)    
Predicted Functional Partners:
SDE39162.1
Hypothetical protein.
 
  
 0.984
SDD35702.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.941
SDD99220.1
Hypothetical protein.
 
  
 0.929
SDE39195.1
Hypothetical protein.
 
  
 0.906
SDE39213.1
Signal transduction histidine kinase.
 
 
 0.890
SDE08076.1
Electron transfer flavoprotein alpha subunit.
  
 
 0.870
SDE08049.1
Electron transfer flavoprotein beta subunit.
  
 
 0.865
SDD36025.1
Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family.
 
  
 0.840
SDD36040.1
Signal transduction histidine kinase.
 
 
 0.832
SDD99146.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.832
Your Current Organism:
Glycomyces harbinensis
NCBI taxonomy Id: 58114
Other names: ATCC 43155, DSM 46494, G. harbinensis, IFO 14487, JCM 7347, NBRC 14487, NRRL 15337, strain LL-DO5139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.