STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE45742.1Methylaspartate mutase sigma subunit. (141 aa)    
Predicted Functional Partners:
SDE45729.1
Glutamate mutase subunit E.
 
 
  0.998
SDD18557.1
methylmalonyl-CoA mutase, N-terminal domain.
  
 0.959
SDD47330.1
methylmalonyl-CoA mutase, N-terminal domain.
  
 0.959
SDD97789.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
  
 0.832
SDE47087.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
 
 0.816
SDE28522.1
LAO/AO transport system kinase.
  
  
 0.719
SDE45708.1
Hypothetical protein.
 
  
  0.648
SDE45763.1
Fatty acid desaturase.
       0.613
SDD78409.1
Poly(3-hydroxybutyrate) depolymerase.
  
     0.602
SDE45670.1
ATP-grasp domain-containing protein.
    
  0.514
Your Current Organism:
Glycomyces harbinensis
NCBI taxonomy Id: 58114
Other names: ATCC 43155, DSM 46494, G. harbinensis, IFO 14487, JCM 7347, NBRC 14487, NRRL 15337, strain LL-DO5139
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