STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ22071.1Hypothetical protein. (296 aa)    
Predicted Functional Partners:
lipB
Lipoyl(octanoyl) transferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
       0.701
SIQ22035.1
Peptidase E; Belongs to the peptidase S51 family.
       0.672
SIQ22105.1
2-oxoglutarate dehydrogenase E2 component.
  
    0.625
SIR88935.1
Hypothetical protein.
  
    0.612
SIQ22138.1
Dihydrolipoamide dehydrogenase.
  
    0.551
arcA
Arginine deiminase.
   
    0.539
SIQ65977.1
Uncharacterized conserved protein YbgA, DUF1722 family.
 
     0.539
SIQ64581.1
Uncharacterized protein YoxC, contains an MCP-like domain.
   
    0.518
SIR59262.1
CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
    0.518
SIQ67891.1
PPOX class probable F420-dependent enzyme.
   
    0.516
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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