SIQ18921.1 protein (Microbispora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SIQ18921.1

Peptide/nickel transport system permease protein. (336 aa)

Predicted Functional Partners:

SIQ18891.1

0.989

SIQ18950.1

0.973

SIQ18862.1

0.949

SIQ82653.1

0.873

SIS05765.1

0.871

SIS21585.1

0.868

SIR59449.1

0.866

SIR88506.1

0.865

SIR87853.1

0.859

SIR88458.1

0.856

Your Current Organism:

Microbispora rosea

NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIQ18862.1	SIQ18891.1	SAMN05421833_10182	SAMN05421833_10183	Peptide/nickel transport system ATP-binding protein.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	0.946
SIQ18862.1	SIQ18921.1	SAMN05421833_10182	SAMN05421833_10184	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.949
SIQ18862.1	SIQ18950.1	SAMN05421833_10182	SAMN05421833_10185	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system substrate-binding protein.	0.877
SIQ18862.1	SIQ82653.1	SAMN05421833_10182	SAMN05421833_10410	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.978
SIQ18862.1	SIR59449.1	SAMN05421833_10182	SAMN05421833_11194	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.977
SIQ18862.1	SIR87853.1	SAMN05421833_10182	SAMN05421833_11832	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.965
SIQ18862.1	SIR88458.1	SAMN05421833_10182	SAMN05421833_11882	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system substrate-binding protein.	0.564
SIQ18862.1	SIR88506.1	SAMN05421833_10182	SAMN05421833_11886	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.976
SIQ18862.1	SIS05765.1	SAMN05421833_10182	SAMN05421833_12515	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.962
SIQ18862.1	SIS21585.1	SAMN05421833_10182	SAMN05421833_14051	Peptide/nickel transport system ATP-binding protein.	Peptide/nickel transport system permease protein.	0.964
SIQ18891.1	SIQ18862.1	SAMN05421833_10183	SAMN05421833_10182	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system ATP-binding protein.	0.946
SIQ18891.1	SIQ18921.1	SAMN05421833_10183	SAMN05421833_10184	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system permease protein.	0.989
SIQ18891.1	SIQ18950.1	SAMN05421833_10183	SAMN05421833_10185	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system substrate-binding protein.	0.987
SIQ18891.1	SIQ82653.1	SAMN05421833_10183	SAMN05421833_10410	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system permease protein.	0.608
SIQ18891.1	SIR59449.1	SAMN05421833_10183	SAMN05421833_11194	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system permease protein.	0.612
SIQ18891.1	SIR87853.1	SAMN05421833_10183	SAMN05421833_11832	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system permease protein.	0.637
SIQ18891.1	SIR88458.1	SAMN05421833_10183	SAMN05421833_11882	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system substrate-binding protein.	0.842
SIQ18891.1	SIR88506.1	SAMN05421833_10183	SAMN05421833_11886	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system permease protein.	0.624
SIQ18891.1	SIS05765.1	SAMN05421833_10183	SAMN05421833_12515	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system permease protein.	0.616
SIQ18891.1	SIS21585.1	SAMN05421833_10183	SAMN05421833_14051	Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.	Peptide/nickel transport system permease protein.	0.603