STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ52208.1Hypothetical protein. (382 aa)    
Predicted Functional Partners:
SIQ52143.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
  
 0.956
SIQ52268.1
Membrane domain of glycerophosphoryl diester phosphodiesterase.
 
     0.950
SIQ52236.1
Protein of unknown function.
 
     0.946
SIQ52175.1
MoxR-like ATPase.
     0.909
SIQ52118.1
Uncharacterized membrane protein SpoIIM, required for sporulation.
 
    0.783
SIQ52093.1
Uncharacterized membrane protein YckC, RDD family.
 
    0.777
SIR01029.1
Protoporphyrin IX magnesium-chelatase.
  
 
 0.537
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
    
 0.466
SIQ52298.1
Two-component system, OmpR family, response regulator MtrA.
       0.419
SIQ52357.1
Sporulation and spore germination.
       0.418
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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