STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR02183.1Polysaccharide deacetylase. (256 aa)    
Predicted Functional Partners:
SIR02218.1
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase.
 
  
  0.766
SIR02062.1
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
 
     0.533
SIR01965.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
       0.461
ispH-2
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.461
SIR02091.1
Squalene-associated FAD-dependent desaturase.
       0.461
SIR02119.1
Farnesyl-diphosphate farnesyltransferase.
       0.461
SIR02148.1
Squalene synthase HpnC.
       0.461
SIR13299.1
Endoglucanase.
    
 0.453
SIS10179.1
Glycosyl transferase family group 2.
  
 
  0.418
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.