STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR02441.1Dihydroorotase. (541 aa)    
Predicted Functional Partners:
SIR97454.1
Hexosaminidase.
  
  0.955
SIR94967.1
Hexosaminidase.
  
  0.934
SIR02410.1
Beta-lactamase class A.
 
     0.820
SIS19541.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
   
 0.807
SIR02477.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
       0.773
SIR02507.1
Polar amino acid transport system permease protein.
       0.773
SIR02541.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
       0.773
SIS17812.1
Hypothetical protein.
 
     0.762
SIR00542.1
N-acyl-D-amino-acid deacylase.
 
     0.551
SIR02571.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
       0.511
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.