STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR04550.1Catechol 2,3-dioxygenase. (146 aa)    
Predicted Functional Partners:
SIR54154.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.607
SIR68960.1
Heterodimeric methylmalonyl-CoA mutase large subunit precursor.
    
 0.594
SIR74469.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.462
SIQ24293.1
Transcriptional regulator, MarR family with acetyltransferase activity.
 
  
  0.449
SIR04523.1
Hypothetical protein.
       0.406
SIQ99816.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.405
SIR86581.1
Glyoxylase, beta-lactamase superfamily II.
   
 
  0.405
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.