STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR04982.1Lipooligosaccharide transport system permease protein. (266 aa)    
Predicted Functional Partners:
SIR04955.1
Lipooligosaccharide transport system permease protein.
 
  
 
0.984
SIR04932.1
Lipooligosaccharide transport system ATP-binding protein.
 
 
  0.964
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
      0.543
SIR04905.1
Nucleotide-binding universal stress protein, UspA family.
       0.524
SIR46710.1
ABC-2 type transport system permease protein.
  
  
  0.514
SIS20773.1
ABC-2 type transport system permease protein.
  
  
  0.490
SIS20767.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.486
SIS06084.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.481
SIR46729.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.470
SIQ55411.1
ABC-type multidrug transport system, ATPase component.
  
 
  0.452
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.