SIR12225.1 protein (Microbispora rosea) - STRING interaction network

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Score

SIR12225.1

ATPase components of ABC transporters with duplicated ATPase domains. (530 aa)

Predicted Functional Partners:

rpsI

0.876

rplU

0.870

rplO

0.865

rpsP

0.860

rpsF

0.856

rplD

0.854

rpsO

0.849

rpsC

0.848

rplM

0.848

rplC

0.847

Your Current Organism:

Microbispora rosea

NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIR12225.1	rplC	SAMN05421833_10685	SAMN05421833_1028	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.847
SIR12225.1	rplD	SAMN05421833_10685	SAMN05421833_1029	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.854
SIR12225.1	rplM	SAMN05421833_10685	SAMN05421833_10244	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.848
SIR12225.1	rplO	SAMN05421833_10685	SAMN05421833_10227	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.865
SIR12225.1	rplU	SAMN05421833_10685	SAMN05421833_10619	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.870
SIR12225.1	rpsC	SAMN05421833_10685	SAMN05421833_10214	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.848
SIR12225.1	rpsF	SAMN05421833_10685	SAMN05421833_12570	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.856
SIR12225.1	rpsI	SAMN05421833_10685	SAMN05421833_10245	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.876
SIR12225.1	rpsO	SAMN05421833_10685	SAMN05421833_13174	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.849
SIR12225.1	rpsP	SAMN05421833_10685	SAMN05421833_108192	ATPase components of ABC transporters with duplicated ATPase domains.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.860
rplC	SIR12225.1	SAMN05421833_1028	SAMN05421833_10685	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATPase components of ABC transporters with duplicated ATPase domains.	0.847
rplC	rplD	SAMN05421833_1028	SAMN05421833_1029	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN05421833_1028	SAMN05421833_10244	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplO	SAMN05421833_1028	SAMN05421833_10227	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplU	SAMN05421833_1028	SAMN05421833_10619	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplC	rpsC	SAMN05421833_1028	SAMN05421833_10214	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsF	SAMN05421833_1028	SAMN05421833_12570	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
rplC	rpsI	SAMN05421833_1028	SAMN05421833_10245	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.	0.999
rplC	rpsO	SAMN05421833_1028	SAMN05421833_13174	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
rplC	rpsP	SAMN05421833_1028	SAMN05421833_108192	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.998