Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SIR10178.1Rod shape-determining protein MreC. (412 aa)    
Predicted Functional Partners:
SIR10205.1
Rod shape-determining protein MreD.
 
 
 0.984
SIR10155.1
Rod shape-determining protein MreB.
 
 
 0.978
SIR10233.1
Penicillin-binding protein 2.
 
 
 0.968
SIR10267.1
Rod shape determining protein RodA; Belongs to the SEDS family.
 
  
 0.918
SIS18434.1
Rod shape-determining protein MreB.
 
 
 0.904
SIQ98523.1
Rod shape-determining protein MreB.
 
 
 0.872
SIS18463.1
Penicillin-binding protein 2.
 
 
 0.858
SIS14763.1
DNA replication and repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.791
SIS18456.1
Rod shape-determining protein MreD.
  
 
 0.770
SIS14475.1
Helix-turn-helix domain-containing protein.
 
 
 
 0.684
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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