STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR12400.1Hypothetical protein. (240 aa)    
Predicted Functional Partners:
SIR73343.1
Osmoprotectant transport system substrate-binding protein.
  
    0.833
SIR12428.1
IMP dehydrogenase.
       0.551
SIR01425.1
Pyruvate dehydrogenase (quinone)/pyruvate oxidase; Belongs to the TPP enzyme family.
   
    0.546
SIS04935.1
Pyruvate dehydrogenase (quinone); Belongs to the TPP enzyme family.
   
    0.546
SIR12375.1
Peptidylprolyl isomerase.
       0.481
SIQ18072.1
Helicase conserved C-terminal domain-containing protein.
  
    0.453
SIR10318.1
Hypothetical protein.
  
     0.440
SIR12457.1
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain.
       0.401
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.