STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR22679.1Copper-binding protein CopC (methionine-rich). (298 aa)    
Predicted Functional Partners:
SIR22649.1
Putative copper resistance protein D.
 
  
 0.929
SIS03825.1
Hypothetical protein.
  
    0.860
SIS19593.1
Integral membrane protein.
  
    0.825
SIQ19427.1
Putative copper resistance protein D.
 
  
 0.816
SIS16783.1
Putative copper resistance protein D.
 
  
 0.751
SIS03813.1
Dye decolorizing peroxidase.
 
    0.675
SIQ76008.1
Uncharacterized protein YcnI.
 
  
 0.643
SIS16738.1
Uncharacterized protein YcnI.
 
  
 0.635
SIR69019.1
Deferrochelatase/peroxidase EfeB; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
    0.618
SIS23791.1
Deferrochelatase/peroxidase EfeB; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
    0.605
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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