STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR44301.1Small conductance mechanosensitive channel. (322 aa)    
Predicted Functional Partners:
SIR44280.1
Hypothetical protein.
       0.773
SIR44327.1
Hemoglobin.
       0.756
SIR44259.1
Hypothetical protein.
       0.709
SIR44350.1
Alpha-glucosidase.
  
    0.614
SIR33458.1
Large conductance mechanosensitive channel.
     
 0.536
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.523
SIQ43335.1
Hypothetical protein.
  
   
 0.492
SIQ72151.1
Small-conductance mechanosensitive channel.
      
 0.455
SIQ71948.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
    
  0.432
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.