STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR63984.1Uncharacterized membrane protein YbhN, UPF0104 family. (323 aa)    
Predicted Functional Partners:
SIS15788.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.856
SIS15782.1
N-acetylglucosaminyl deacetylase, LmbE family.
 
 
  0.747
SIS21053.1
Nickel superoxide dismutase.
  
     0.644
SIR60951.1
Mannose-1-phosphate guanylyltransferase / phosphomannomutase.
  
 0.584
SIS00343.1
Hypothetical protein.
  
 
   0.492
SIR53437.1
Undecaprenyl-phosphate galactose phosphotransferase, WbaP/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.484
SIQ30349.1
Methylamine utilisation protein MauE.
  
    0.467
SIQ97758.1
Putative hydrolase of the HAD superfamily.
  
 
  0.465
SIR22868.1
Hypothetical protein.
  
 
   0.465
SIR81813.1
Putative RecB family exonuclease.
  
     0.465
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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