Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIR75351.1 | SIR75367.1 | SAMN05421833_114170 | SAMN05421833_114171 | Hypothetical protein. | ATP-dependent DNA helicase RecG. | 0.904 |
SIR75351.1 | SIR75382.1 | SAMN05421833_114170 | SAMN05421833_114172 | Hypothetical protein. | 16S rRNA (guanine966-N2)-methyltransferase. | 0.693 |
SIR75351.1 | SIR75415.1 | SAMN05421833_114170 | SAMN05421833_114174 | Hypothetical protein. | Uncharacterized protein. | 0.560 |
SIR75351.1 | coaD | SAMN05421833_114170 | SAMN05421833_114173 | Hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.700 |
SIR75351.1 | rnc | SAMN05421833_114170 | SAMN05421833_114176 | Hypothetical protein. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.470 |
SIR75351.1 | rpmB | SAMN05421833_114170 | SAMN05421833_114169 | Hypothetical protein. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.637 |
SIR75351.1 | rpmF | SAMN05421833_114170 | SAMN05421833_114175 | Hypothetical protein. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.560 |
SIR75367.1 | SIR75351.1 | SAMN05421833_114171 | SAMN05421833_114170 | ATP-dependent DNA helicase RecG. | Hypothetical protein. | 0.904 |
SIR75367.1 | SIR75382.1 | SAMN05421833_114171 | SAMN05421833_114172 | ATP-dependent DNA helicase RecG. | 16S rRNA (guanine966-N2)-methyltransferase. | 0.637 |
SIR75367.1 | SIR75415.1 | SAMN05421833_114171 | SAMN05421833_114174 | ATP-dependent DNA helicase RecG. | Uncharacterized protein. | 0.572 |
SIR75367.1 | coaD | SAMN05421833_114171 | SAMN05421833_114173 | ATP-dependent DNA helicase RecG. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.637 |
SIR75367.1 | rnc | SAMN05421833_114171 | SAMN05421833_114176 | ATP-dependent DNA helicase RecG. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.492 |
SIR75367.1 | rpmB | SAMN05421833_114171 | SAMN05421833_114169 | ATP-dependent DNA helicase RecG. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.648 |
SIR75367.1 | rpmF | SAMN05421833_114171 | SAMN05421833_114175 | ATP-dependent DNA helicase RecG. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.579 |
SIR75382.1 | SIR75351.1 | SAMN05421833_114172 | SAMN05421833_114170 | 16S rRNA (guanine966-N2)-methyltransferase. | Hypothetical protein. | 0.693 |
SIR75382.1 | SIR75367.1 | SAMN05421833_114172 | SAMN05421833_114171 | 16S rRNA (guanine966-N2)-methyltransferase. | ATP-dependent DNA helicase RecG. | 0.637 |
SIR75382.1 | SIR75415.1 | SAMN05421833_114172 | SAMN05421833_114174 | 16S rRNA (guanine966-N2)-methyltransferase. | Uncharacterized protein. | 0.721 |
SIR75382.1 | coaD | SAMN05421833_114172 | SAMN05421833_114173 | 16S rRNA (guanine966-N2)-methyltransferase. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.987 |
SIR75382.1 | der | SAMN05421833_114172 | SAMN05421833_101539 | 16S rRNA (guanine966-N2)-methyltransferase. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.676 |
SIR75382.1 | ftsY | SAMN05421833_114172 | SAMN05421833_114181 | 16S rRNA (guanine966-N2)-methyltransferase. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.714 |
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