STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR72955.1SagB-type dehydrogenase domain-containing protein. (501 aa)    
Predicted Functional Partners:
SIR72940.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.957
SIR72971.1
Biotin carboxyl carrier protein.
 
     0.878
SIR73006.1
NHLM bacteriocin system ABC transporter, ATP-binding protein.
 
     0.858
SIR72989.1
NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein.
 
     0.827
SIR44670.1
uroporphyrinogen-III C-methyltransferase.
    
 0.743
SIS07784.1
uroporphyrinogen-III synthase.
  
 
 0.714
SIR23438.1
Probable phosphoglycerate mutase.
 
  
  0.711
SIR58548.1
Ribosomal protein S12 methylthiotransferase accessory factor.
 
  
 0.541
SIQ84863.1
Adenylyltransferase and sulfurtransferase.
    
  0.533
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.464
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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