STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR78696.1Transcriptional attenuator, LytR family. (390 aa)    
Predicted Functional Partners:
SIS17581.1
Transcriptional regulator.
  
    0.852
SIS09380.1
DNA-binding transcriptional activator of the SARP family.
  
    0.846
cobB
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.843
SIR36205.1
DNA-binding transcriptional regulator, MarR family.
   
    0.820
SIR81222.1
Transcriptional regulator, AsnC family.
   
    0.802
SIR22305.1
Non-specific serine/threonine protein kinase.
   
    0.736
SIR90277.1
Predicted ATPase.
   
    0.736
SIS23654.1
Transcriptional attenuator, LytR family.
 
   
0.618
SIQ50622.1
Transcriptional attenuator, LytR family.
 
   
0.612
SIQ51134.1
Transcriptional attenuator, LytR family.
 
   
0.611
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.