STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR83002.1tRNA-splicing ligase RtcB. (384 aa)    
Predicted Functional Partners:
SIR82987.1
Phosphotransferase enzyme family protein.
       0.565
SIR44755.1
Protein of unknown function.
  
    0.519
SIR44777.1
Hypothetical protein.
  
    0.519
SIS17462.1
Hypothetical protein.
  
    0.519
kptA
Putative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
   
 0.472
SIR64164.1
MoxR-like ATPase.
  
     0.452
SIQ85373.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
   
 0.435
SIR63605.1
Superfamily II DNA and RNA helicase.
   
 0.435
SIS16791.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
   
 0.435
SIS17529.1
Superfamily II DNA and RNA helicase.
   
 0.435
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.