STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS01876.1Spore photoproduct lyase family protein. (364 aa)    
Predicted Functional Partners:
SIS01866.1
Endonuclease-8.
       0.753
SIR02634.1
Protein of unknown function.
  
     0.659
SIQ66767.1
Protein of unknown function.
 
     0.591
SIS11066.1
Serine/threonine-protein kinase RsbW/sigma-B regulation protein RsbU (phosphoserine phosphatase).
  
     0.576
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
  0.499
SIS11103.1
Short-chain dehydrogenase.
 
     0.437
SIS24401.1
DGQHR domain-containing protein.
  
     0.427
SIR72632.1
Hypothetical protein.
  
     0.426
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.