STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS04407.1Uncharacterized protein YjaZ. (294 aa)    
Predicted Functional Partners:
SIR85618.1
Site-specific DNA recombinase.
  
     0.642
SIS04417.1
Hypothetical protein.
       0.613
SIS04396.1
Hypothetical protein.
       0.538
SIS04386.1
Glycosidase.
       0.482
SIQ74039.1
Ribosomal protein S18 acetylase RimI.
  
     0.437
SIR77619.1
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase.
  
     0.431
SIS01143.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.424
SIS04377.1
Histidine kinase.
       0.408
SIR47586.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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