STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS06150.1Carotenoid cleavage dioxygenase. (439 aa)    
Predicted Functional Partners:
SIS06160.1
Hypothetical protein.
       0.818
SIR55218.1
Hypothetical protein.
    
  0.742
SIS23555.1
Hypothetical protein.
  
 
 0.677
SIS06170.1
Transcriptional regulator, PadR family.
 
     0.653
SIR18618.1
Dephospho-CoA kinase.
   
 
 0.634
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
      
 0.540
SIQ52143.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
      
 0.537
egtD
L-histidine Nalpha-methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
  
   
 0.521
SIS04288.1
Protein of unknown function DUF58.
      
 0.520
SIQ33720.1
Alpha/beta hydrolase fold.
  
     0.482
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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