SIS10924.1 protein (Microbispora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SIS10924.1

ATP-binding cassette, subfamily B. (577 aa)

Predicted Functional Partners:

SIR84888.1

0.899

metN

0.851

SIS10931.1

0.822

SIR94314.1

0.692

SIQ19921.1

0.505

SIR63742.1

0.492

SIR60909.1

0.484

SIR73006.1

0.477

SIR72989.1

0.476

SIS10917.1

0.476

Your Current Organism:

Microbispora rosea

NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIQ19921.1	SIS10924.1	SAMN05421833_101116	SAMN05421833_12843	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B.	0.505
SIQ19921.1	SIS10931.1	SAMN05421833_101116	SAMN05421833_12844	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B.	0.508
SIR60909.1	SIS10924.1	SAMN05421833_111171	SAMN05421833_12843	ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.	ATP-binding cassette, subfamily B.	0.484
SIR60909.1	SIS10931.1	SAMN05421833_111171	SAMN05421833_12844	ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.	ATP-binding cassette, subfamily B.	0.487
SIR63742.1	SIS10924.1	SAMN05421833_11229	SAMN05421833_12843	Polar amino acid transport system ATP-binding protein.	ATP-binding cassette, subfamily B.	0.492
SIR72989.1	SIR73006.1	SAMN05421833_11424	SAMN05421833_11425	NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein.	NHLM bacteriocin system ABC transporter, ATP-binding protein.	0.854
SIR72989.1	SIS10924.1	SAMN05421833_11424	SAMN05421833_12843	NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein.	ATP-binding cassette, subfamily B.	0.476
SIR72989.1	SIS10931.1	SAMN05421833_11424	SAMN05421833_12844	NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein.	ATP-binding cassette, subfamily B.	0.481
SIR73006.1	SIR72989.1	SAMN05421833_11425	SAMN05421833_11424	NHLM bacteriocin system ABC transporter, ATP-binding protein.	NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein.	0.854
SIR73006.1	SIS10924.1	SAMN05421833_11425	SAMN05421833_12843	NHLM bacteriocin system ABC transporter, ATP-binding protein.	ATP-binding cassette, subfamily B.	0.477
SIR73006.1	SIS10931.1	SAMN05421833_11425	SAMN05421833_12844	NHLM bacteriocin system ABC transporter, ATP-binding protein.	ATP-binding cassette, subfamily B.	0.481
SIR84888.1	SIS10924.1	SAMN05421833_11729	SAMN05421833_12843	Amino acid ABC transporter ATP-binding protein, PAAT family.	ATP-binding cassette, subfamily B.	0.899
SIR94314.1	SIS10924.1	SAMN05421833_12063	SAMN05421833_12843	Acyl transferase domain-containing protein.	ATP-binding cassette, subfamily B.	0.692
SIR94314.1	SIS10931.1	SAMN05421833_12063	SAMN05421833_12844	Acyl transferase domain-containing protein.	ATP-binding cassette, subfamily B.	0.692
SIS10917.1	SIS10924.1	SAMN05421833_12842	SAMN05421833_12843	CBS domain-containing protein.	ATP-binding cassette, subfamily B.	0.476
SIS10917.1	SIS10931.1	SAMN05421833_12842	SAMN05421833_12844	CBS domain-containing protein.	ATP-binding cassette, subfamily B.	0.476
SIS10924.1	SIQ19921.1	SAMN05421833_12843	SAMN05421833_101116	ATP-binding cassette, subfamily B.	ATP-binding cassette, subfamily B.	0.505
SIS10924.1	SIR60909.1	SAMN05421833_12843	SAMN05421833_111171	ATP-binding cassette, subfamily B.	ABC-type bacteriocin/lantibiotic exporter, contains an N-terminal double-glycine peptidase domain.	0.484
SIS10924.1	SIR63742.1	SAMN05421833_12843	SAMN05421833_11229	ATP-binding cassette, subfamily B.	Polar amino acid transport system ATP-binding protein.	0.492
SIS10924.1	SIR72989.1	SAMN05421833_12843	SAMN05421833_11424	ATP-binding cassette, subfamily B.	NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein.	0.476