SIS16987.1 protein (Microbispora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SIS16987.1

Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain. (372 aa)

Predicted Functional Partners:

SIQ98919.1

0.833

SIS16994.1

0.801

SIQ47150.1

0.744

SIR59558.1

0.556

SIS16982.1

0.533

cutC

0.506

SIQ23868.1

0.493

SIS16958.1

0.493

SIS16963.1

0.493

SIS16970.1

0.493

Your Current Organism:

Microbispora rosea

NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIQ23868.1	SIR59558.1	SAMN05421833_101238	SAMN05421833_11199	Glucokinase.	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	0.771
SIQ23868.1	SIS16987.1	SAMN05421833_101238	SAMN05421833_13376	Glucokinase.	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	0.493
SIQ47150.1	SIQ98919.1	SAMN05421833_102187	SAMN05421833_10567	MarR family protein.	Glucokinase/fructokinase.	0.668
SIQ47150.1	SIR59558.1	SAMN05421833_102187	SAMN05421833_11199	MarR family protein.	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	0.671
SIQ47150.1	SIS16987.1	SAMN05421833_102187	SAMN05421833_13376	MarR family protein.	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	0.744
SIQ98919.1	SIQ47150.1	SAMN05421833_10567	SAMN05421833_102187	Glucokinase/fructokinase.	MarR family protein.	0.668
SIQ98919.1	SIR59558.1	SAMN05421833_10567	SAMN05421833_11199	Glucokinase/fructokinase.	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	0.924
SIQ98919.1	SIS16987.1	SAMN05421833_10567	SAMN05421833_13376	Glucokinase/fructokinase.	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	0.833
SIR59558.1	SIQ23868.1	SAMN05421833_11199	SAMN05421833_101238	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	Glucokinase.	0.771
SIR59558.1	SIQ47150.1	SAMN05421833_11199	SAMN05421833_102187	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	MarR family protein.	0.671
SIR59558.1	SIQ98919.1	SAMN05421833_11199	SAMN05421833_10567	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	Glucokinase/fructokinase.	0.924
SIR59558.1	SIS16987.1	SAMN05421833_11199	SAMN05421833_13376	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	0.556
SIS16958.1	SIS16963.1	SAMN05421833_13371	SAMN05421833_13372	Asparaginase.	Amino acid ABC transporter membrane protein 2, PAAT family.	0.774
SIS16958.1	SIS16970.1	SAMN05421833_13371	SAMN05421833_13373	Asparaginase.	Amino acid ABC transporter membrane protein 1, PAAT family.	0.773
SIS16958.1	SIS16982.1	SAMN05421833_13371	SAMN05421833_13375	Asparaginase.	Glutamate transport system ATP-binding protein.	0.709
SIS16958.1	SIS16987.1	SAMN05421833_13371	SAMN05421833_13376	Asparaginase.	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.	0.493
SIS16958.1	SIS16994.1	SAMN05421833_13371	SAMN05421833_13377	Asparaginase.	Phosphoglycolate phosphatase.	0.506
SIS16958.1	cutC	SAMN05421833_13371	SAMN05421833_13370	Asparaginase.	Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.	0.713
SIS16963.1	SIS16958.1	SAMN05421833_13372	SAMN05421833_13371	Amino acid ABC transporter membrane protein 2, PAAT family.	Asparaginase.	0.774
SIS16963.1	SIS16970.1	SAMN05421833_13372	SAMN05421833_13373	Amino acid ABC transporter membrane protein 2, PAAT family.	Amino acid ABC transporter membrane protein 1, PAAT family.	0.966