STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS21908.1Pilus assembly protein, ATPase of CpaF family. (437 aa)    
Predicted Functional Partners:
SIS21911.1
Flp pilus assembly protein TadB.
 
  
 0.936
SIS21914.1
Type II secretion system protein F (GspF).
 
  
 0.934
SIS21905.1
Hypothetical protein.
 
  
 0.915
SIS21919.1
TadE-like protein.
 
    0.877
SIS21901.1
SAF domain-containing protein.
 
    0.859
SIS11964.1
Type II secretion system (T2SS), protein F.
 
  
 0.715
SIS21918.1
Hypothetical protein.
       0.705
SIS11971.1
Type II secretion system protein F (GspF).
 
  
 0.699
SIQ49027.1
Flp pilus assembly protein TadB.
 
  
 0.691
SIQ49064.1
Hypothetical protein.
 
  
 0.687
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.