STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS23284.1Serine phosphatase RsbU, regulator of sigma subunit. (533 aa)    
Predicted Functional Partners:
SIS23280.1
Methanogenic corrinoid protein MtbC1.
     0.949
SIS22951.1
PAS domain S-box-containing protein.
 
0.816
SIS23275.1
Anti-sigma B factor antagonist.
 
  0.811
SIR79015.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.807
SIS08470.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
  0.784
SIR92047.1
PAS domain S-box-containing protein.
 
0.779
SIR59676.1
Anti-sigma B factor antagonist/stage II sporulation protein AA (anti-sigma F factor antagonist); Belongs to the anti-sigma-factor antagonist family.
 
  0.770
SIS22627.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.762
SIR48195.1
Signal transduction histidine kinase.
  
 
 0.759
SIR65464.1
GAF sensor hybrid histidine kinase.
  
 
 0.759
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.