STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS24879.1Glucose/arabinose dehydrogenase, beta-propeller fold. (1179 aa)    
Predicted Functional Partners:
SIR23948.1
Ig-like domain (group 3).
 
  
  0.982
SIR23893.1
PKD domain-containing protein.
 
  
 
0.909
SIS16928.1
Glucose / Sorbosone dehydrogenase.
 
  
 
0.908
SIS24858.1
Glucose / Sorbosone dehydrogenase.
 
  
 
0.901
SIS25191.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
 
  
 
0.898
SIR30158.1
Type 1 glutamine amidotransferase (GATase1).
 
  
 
0.888
SIR84505.1
Copper binding protein, plastocyanin/azurin family.
 
  
  0.881
SIS24881.1
D-psicose/D-tagatose/L-ribulose 3-epimerase.
 
   
 0.864
SIR23919.1
Uncharacterized copper-binding protein, cupredoxin-like subfamily.
  
  
  0.863
SIR26763.1
Hypothetical protein.
 
     0.843
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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