Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_0412400RING finger protein RNF1, putative. (920 aa)    
Predicted Functional Partners:
PBANKA_1141700
Ubiquitin-60S ribosomal protein L40, putative.
    
 0.845
PBANKA_0315600
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.729
PBANKA_0610300
Polyubiquitin, putative.
    
 0.719
PBANKA_1039400
Ribosomal protein S27a, putative.
    
 0.686
PBANKA_0105000
Ubiquitin-conjugating enzyme E2 PEX4, putative.
   
 0.637
PBANKA_0602800
Ubiquitin-conjugating enzyme E2, putative; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.637
PBANKA_1241900
Ubiquitin-conjugating enzyme E2 N, putative; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.637
PBANKA_1132600
Ubiquitin-conjugating enzyme E2, putative; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.582
PBANKA_1403400
DNA-directed RNA polymerase II subunit RPB11, putative.
   
   0.569
PBANKA_0823900
DNA-directed RNA polymerase II subunit RPB3, putative.
    
   0.558
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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