STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_0712300Zinc finger protein, putative. (226 aa)    
Predicted Functional Partners:
PBANKA_1039400
Ribosomal protein S27a, putative.
    
 0.842
PBANKA_1141700
Ubiquitin-60S ribosomal protein L40, putative.
    
 0.836
PBANKA_0206500
Ras-related protein Rab-5C, putative.
   
 0.821
PBANKA_0308000
Ras-related protein Rab-5A, putative.
   
 0.821
PBANKA_1409100
Ras-related protein Rab-5B, putative.
   
 0.821
PBANKA_0315600
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.702
PBANKA_0610300
Polyubiquitin, putative.
    
 0.702
PBANKA_1210100
DNA repair protein RAD23, putative.
    
 0.622
PBANKA_0934200
Ubiquitin domain-containing protein DSK2, putative.
    
 0.607
PBANKA_0916400
Ubiquitin-like protein, putative.
    
 0.607
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.