STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_0806600Cleavage and polyadenylation specificity factor, putative. (967 aa)    
Predicted Functional Partners:
PBANKA_1207500
Ribonuclease, putative.
    
 0.999
PBANKA_1023300
Cleavage and polyadenylation specificity factor subunit 4, putative.
    
 0.998
PBANKA_0711800
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.979
PBANKA_0203300
DNA-directed RNA polymerase II subunit RPB9, putative.
   
 0.942
PBANKA_1112900
CPSF_A domain-containing protein.
   
 0.931
PBANKA_1140600
DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative.
   
  0.910
PBANKA_1029400
Uncharacterized protein.
   
 0.901
PBANKA_1355800
DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative.
   
 0.897
PBANKA_1217400
Uncharacterized protein.
  
 0.894
PBANKA_0401900
DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative.
  
  0.886
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.