STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1002800Protein transport protein Sec24B, putative. (1381 aa)    
Predicted Functional Partners:
PBANKA_0708000
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.999
PBANKA_1137200
Protein transport protein Sec24A, putative.
   
0.999
PBANKA_1445400
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
   
 0.993
PBANKA_0311000
Protein transport protein SEC31, putative.
   
 0.970
PBANKA_0718800
Small GTP-binding protein sar1, putative; Belongs to the small GTPase superfamily. SAR1 family.
   
 
 0.931
PBANKA_1346800
Qa-SNARE protein, putative.
    
 0.897
PBANKA_1218400
Protein transport protein SEC22, putative; Belongs to the synaptobrevin family.
   
 
 0.889
PBANKA_0936300
Protein transport protein BOS1, putative.
   
 
 0.879
PBANKA_0408700
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
     
 0.861
PBANKA_0931600
Guanine nucleotide-exchange factor SEC12, putative.
   
 0.834
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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