STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_0921600RNA-binding protein, putative. (728 aa)    
Predicted Functional Partners:
PBANKA_1232100
Serine/arginine-rich splicing factor 1, putative.
   
 0.986
PBANKA_0928800
Splicing factor U2AF small subunit, putative.
   
 0.960
PBANKA_1140200
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative.
   
 
 0.949
PBANKA_1435300
Pre-mRNA-processing factor 17, putative.
     
 0.948
PBANKA_1143000
U1 small nuclear ribonucleoprotein 70 kDa homolog, putative.
   
0.884
PBANKA_0409100
Pre-mRNA splicing factor, putative.
   
 0.863
A0A509AIR2
RNA-binding protein, putative.
   
 0.846
PBANKA_0506600
Serine/arginine-rich splicing factor 4, putative.
   
 0.846
A0A509AMJ8
RNA-binding protein, putative.
   
 0.846
PBANKA_1202700
RNA-binding protein, putative.
   
 0.846
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.