STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1135600Exosome complex exonuclease RRP44, putative; Belongs to the RNR ribonuclease family. (1017 aa)    
Predicted Functional Partners:
PBANKA_0617500
Exosome complex component CSL4, putative.
   
 0.982
PBANKA_1405500
Exosome complex component RRP40, putative.
   
 0.980
PBANKA_1007800
Exosome complex component RRP4, putative.
   
 0.979
PBANKA_1140400
Exosome complex component RRP45, putative.
   
 0.975
PBANKA_1353500
Exosome complex component RRP42, putative.
   
 0.962
PBANKA_0831800
Elongation factor Tu, putative.
   
 0.945
PBANKA_0100900
ATP-dependent RNA helicase, putative.
   
 0.915
PBANKA_1313400
Exosome complex exonuclease RRP6, putative.
   
 
 0.896
PBANKA_0306300
Exosome complex component MTR3, putative.
   
 0.867
PBANKA_1016800
Exosome complex component RRP41, putative.
   
 0.867
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.