STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_0911400CLPTM1 domain-containing protein, putative. (648 aa)    
Predicted Functional Partners:
PBANKA_1122800
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
 
      0.791
PBANKA_0941900
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
   0.556
PBANKA_1343400
Uncharacterized protein.
    
   0.525
PBANKA_1141700
Ubiquitin-60S ribosomal protein L40, putative.
     
 0.503
PBANKA_0108800
Histone H3; Belongs to the histone H3 family.
    
 
 0.441
PBANKA_1117100
Histone H3; Belongs to the histone H3 family.
    
 
 0.441
PBANKA_1348400
Histone H3-like centromeric protein CSE4, putative.
    
 
 0.441
PBANKA_1039400
Ribosomal protein S27a, putative.
    
  0.437
PBANKA_0600031
BIR protein.
    
 
 0.432
PBANKA_0928400
Uncharacterized protein.
    
 
 0.432
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.