STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1207500Ribonuclease, putative. (848 aa)    
Predicted Functional Partners:
PBANKA_0806600
Cleavage and polyadenylation specificity factor, putative.
    
 0.999
PBANKA_1023300
Cleavage and polyadenylation specificity factor subunit 4, putative.
    
 0.997
PBANKA_0203300
DNA-directed RNA polymerase II subunit RPB9, putative.
   
 0.939
PBANKA_1112900
CPSF_A domain-containing protein.
   
 0.912
PBANKA_1429500
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
  0.900
PBANKA_1140600
DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative.
   
  0.897
PBANKA_1355800
DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative.
   
 0.897
PBANKA_1217400
Uncharacterized protein.
  
 0.893
PBANKA_0401900
DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative.
  
  0.885
PBANKA_1029400
Uncharacterized protein.
   
 0.866
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.