STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1112200Uncharacterized protein. (819 aa)    
Predicted Functional Partners:
PBANKA_1436100
Heterochromatin protein 1.
    
 0.869
PBANKA_1454600
Uncharacterized protein.
   
 
 0.767
PBANKA_0401900
DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative.
   
 0.735
PBANKA_1217600
Histone H2A; Belongs to the histone H2A family.
   
 0.721
PBANKA_0941900
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.712
PBANKA_1206300
Zinc finger protein, putative.
   
 0.709
PBANKA_0823900
DNA-directed RNA polymerase II subunit RPB3, putative.
   
 0.704
PBANKA_0940900
RuvB-like helicase; Belongs to the RuvB family.
    
 0.688
PBANKA_1427700
RuvB-like helicase; Belongs to the RuvB family.
    
 0.688
PBANKA_1105400
Small ubiquitin-related modifier, putative.
    
 0.678
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.