STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1231100tRNA pseudouridine synthase, putative. (532 aa)    
Predicted Functional Partners:
PBANKA_1139700
Protein AMR1, putative.
     
 0.828
PBANKA_0502800
tRNA wybutosine-synthesizing protein, putative.
   
  
 0.703
PBANKA_1451300
S-adenosyl-methyltransferase, putative.
   
 
 0.698
PBANKA_1033500
WD repeat-containing protein, putative.
   
 
 0.660
PBANKA_1309100
Mitochondrial ribosomal protein S29, putative.
   
 
 0.628
PBANKA_0511300
Mitochondrial ribosomal protein S22, putative.
  
   0.627
PBANKA_0921100
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
  
 
 0.577
PBANKA_1013700
Mitochondrial ribosomal protein L17-2, putative.
  
  
 0.566
PBANKA_1237200
50S ribosomal protein L17, apicoplast, putative; Belongs to the bacterial ribosomal protein bL17 family.
  
  
 0.566
PBANKA_1010000
Mitochondrial acidic protein MAM33, putative.
    
   0.563
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.