STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_0704100Ubiquitin conjugation factor E4 B, putative. (1218 aa)    
Predicted Functional Partners:
PBANKA_1107300
Nuclear protein localization protein 4, putative.
    
 
 0.987
PBANKA_1222400
Ubiquitin regulatory protein, putative.
    
 
 0.977
PBANKA_1210100
DNA repair protein RAD23, putative.
   
 0.951
PBANKA_0934200
Ubiquitin domain-containing protein DSK2, putative.
   
 0.910
PBANKA_0916400
Ubiquitin-like protein, putative.
   
 0.910
PBANKA_0835500
UBX domain-containing protein, putative.
   
 
 0.894
PBANKA_1029900
AAA family ATPase, putative.
  
 
 0.890
PBANKA_1118600
Cell division cycle protein 48 homologue, putative.
  
 
 0.890
PBANKA_1221600
Cell division cycle ATPase, putative.
  
 
 0.890
PBANKA_1024700
Ubiquitin fusion degradation protein 1, putative.
    
 
 0.887
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.