STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1215800Uncharacterized protein. (2469 aa)    
Predicted Functional Partners:
PBANKA_1454600
Uncharacterized protein.
   
 0.997
PBANKA_1232200
FACT complex subunit SPT16.
   
 0.964
PBANKA_0514000
Transcription elongation factor SPT4, putative.
    
 0.962
PBANKA_0303200
DNA-directed RNA polymerase II 16 kDa subunit, putative.
    
 0.961
PBANKA_0823900
DNA-directed RNA polymerase II subunit RPB3, putative.
    
 0.961
PBANKA_1140600
DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative.
    
 0.961
PBANKA_1305300
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
   
 0.961
PBANKA_0511500
DNA-directed RNA polymerase II subunit RPB7, putative.
    
 0.960
PBANKA_0401900
DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative.
    
 0.954
PBANKA_0203300
DNA-directed RNA polymerase II subunit RPB9, putative.
    
 0.953
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.