STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1339700DEAD box helicase, putative. (1066 aa)    
Predicted Functional Partners:
PBANKA_1206300
Zinc finger protein, putative.
   
 0.996
PBANKA_0207400
3'-5' exonuclease, putative.
  
 0.995
PBANKA_1014800
ADP-dependent DNA helicase RecQ, putative.
  
 0.995
PBANKA_0520500
TFIIH basal transcription factor complex helicase XPB subunit, putative.
   
 0.960
PBANKA_1413400
General transcription factor IIH subunit.
    
 0.956
PBANKA_1214900
BSD domain-containing protein.
    
 0.955
PBANKA_1130100
RNA polymerase II transcription factor B subunit 4, putative.
    
 0.954
PBANKA_1111900
CDK-activating kinase assembly factor MAT1, putative.
    
 0.951
PBANKA_1457500
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.950
PBANKA_0615000
Transcription initiation factor IIE subunit alpha, putative.
   
 0.947
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.