Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1301700Splicing factor 3A subunit 1, putative. (602 aa)    
Predicted Functional Partners:
PBANKA_0825600
Splicing factor 3A subunit 3, putative.
   
 0.999
PBANKA_1325300
Splicing factor 3B subunit 2, putative.
   
 0.997
PBANKA_0407100
Splicing factor 3B subunit 1, putative.
   
 0.994
PBANKA_1119100
Splicing factor 3A subunit 2, putative.
   
 0.993
PBANKA_1132100
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.993
PBANKA_1449400
Splicing factor 3B subunit 3, putative.
   
 0.993
PBANKA_1108300
Pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative.
   
 0.991
PBANKA_1023200
Splicing factor 3B subunit 4, putative.
   
 0.991
PBANKA_0502700
Pre-mRNA-splicing factor RDS3, putative.
   
 0.989
PBANKA_1027900
Small nuclear ribonucleoprotein-associated protein B, putative.
   
 0.988
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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