STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1315800Leucine-rich repeat protein. (339 aa)    
Predicted Functional Partners:
PBANKA_0811000
Small nuclear ribonucleoprotein Sm D3.
   
 0.750
PBANKA_0315200
Small nuclear ribonucleoprotein Sm D2.
    
 0.749
PBANKA_1363000
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.742
PBANKA_1027900
Small nuclear ribonucleoprotein-associated protein B, putative.
    
 0.736
PBANKA_0922800
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.728
PBANKA_0708400
Small nuclear ribonucleoprotein G.
   
 0.725
PBANKA_0921500
Small nuclear ribonucleoprotein F, putative.
    
 0.722
PBANKA_0835800
U2 small nuclear ribonucleoprotein B'', putative.
   
 0.715
PBANKA_1405400
U1 small nuclear ribonucleoprotein A, putative.
   
 0.715
PBANKA_0104400
Nucleoside diphosphate kinase, putative; Belongs to the NDK family.
   
 0.695
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.