STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1242000Ubiquitin carboxyl-terminal hydrolase. (545 aa)    
Predicted Functional Partners:
PBANKA_0303600
26S proteasome regulatory subunit RPN1, putative.
   
 0.999
PBANKA_0715600
26S protease regulatory subunit 6B, putative; Belongs to the AAA ATPase family.
   
 0.999
PBANKA_0813900
26S proteasome regulatory subunit RPN8, putative.
   
 0.999
PBANKA_1039600
26S proteasome regulatory subunit RPN6, putative.
   
 0.999
PBANKA_1144000
26S proteasome regulatory subunit RPN11, putative.
   
 0.999
PBANKA_1206600
26S protease regulatory subunit 4, putative; Belongs to the AAA ATPase family.
   
 0.999
PBANKA_1410000
26S protease regulatory subunit 7, putative; Belongs to the AAA ATPase family.
   
 0.999
PBANKA_1222900
26S proteasome regulatory subunit RPN10, putative.
   
 0.999
PBANKA_1461800
26S protease regulatory subunit 8, putative; Belongs to the AAA ATPase family.
   
 0.999
PBANKA_0514500
26S proteasome regulatory subunit RPN9, putative.
   
 0.998
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.