Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PBANKA_1454500Polyadenylation factor subunit 2, putative. (481 aa)    
Predicted Functional Partners:
PBANKA_0711800
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.986
PBANKA_1302400
Cleavage and polyadenylation specificity factor subunit 3, putative.
   
 0.985
PBANKA_0834700
Fip1 domain-containing protein.
   
 0.971
PBANKA_1112900
CPSF_A domain-containing protein.
   
 0.971
PBANKA_0833800
CSTF domain-containing protein, putative.
    
 0.969
PBANKA_1028600
Zinc finger protein, putative.
   
 0.965
PBANKA_1241300
Suf domain-containing protein.
   
 0.965
PBANKA_1124500
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.963
PBANKA_1137100
Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.
   
 0.962
PBANKA_0614900
Uncharacterized protein.
    
 0.894
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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