STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1335900DNA-directed RNA polymerase, alpha subunit, putative. (805 aa)    
Predicted Functional Partners:
PBANKA_1206300
Zinc finger protein, putative.
   
 0.997
PBANKA_1454600
Uncharacterized protein.
   
 0.992
PBANKA_0401900
DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative.
  
 0.967
PBANKA_0805400
DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative.
  
 0.961
PBANKA_1140600
DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative.
  
 0.948
PBANKA_0305800
Uncharacterized protein.
   
 0.947
PBANKA_1429500
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.946
PBANKA_1027500
DNA-directed RNA polymerases I and III subunit RPAC2, putative.
   
 0.945
PBANKA_0942200
DNA-directed RNA polymerase III subunit RPC8, putative.
   
 0.938
PBANKA_1021900
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
   
 0.933
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.