STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1335900DNA-directed RNA polymerase, alpha subunit, putative. (805 aa)    
Predicted Functional Partners:
PBANKA_0401900
DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative.
  
 0.918
PBANKA_0805400
DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative.
  
 0.908
PBANKA_1406100
DNA-directed RNA polymerase subunit alpha, putative.
     
 
0.900
PBANKA_0305800
Uncharacterized protein.
   
 0.881
PBANKA_1027500
DNA-directed RNA polymerases I and III subunit RPAC2, putative.
   
 0.871
PBANKA_1140600
DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative.
  
 0.870
PBANKA_1429500
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.865
PBANKA_1021900
DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.
   
 0.858
PBANKA_0903200
Uncharacterized protein.
   
 0.852
PBANKA_0942200
DNA-directed RNA polymerase III subunit RPC8, putative.
   
 0.848
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.