STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1341500RNA-binding protein, putative. (510 aa)    
Predicted Functional Partners:
PBANKA_0928800
Splicing factor U2AF small subunit, putative.
   
 0.993
PBANKA_1332000
Splicing factor U2AF large subunit, putative.
  
  
  0.923
PBANKA_0517400
Pre-mRNA-splicing factor CEF1, putative.
   
 0.879
PBANKA_1122500
Uncharacterized protein.
   
 
 0.863
PBANKA_0407100
Splicing factor 3B subunit 1, putative.
   
 
 0.853
PBANKA_0315200
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.846
PBANKA_1363000
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.840
PBANKA_0921500
Small nuclear ribonucleoprotein F, putative.
   
 
 0.837
PBANKA_1449400
Splicing factor 3B subunit 3, putative.
   
 0.837
PBANKA_1143000
U1 small nuclear ribonucleoprotein 70 kDa homolog, putative.
   
 0.834
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.