STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1411800DEAD box helicase, putative. (797 aa)    
Predicted Functional Partners:
PBANKA_0937400
Pre-mRNA-processing factor 6, putative.
   
 0.799
PBANKA_1202200
U5 small nuclear ribonucleoprotein component, putative.
   
 0.768
PBANKA_0721700
Ran-specific GTPase-activating protein 1, putative.
   
 0.728
PBANKA_0939200
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.703
PBANKA_0407100
Splicing factor 3B subunit 1, putative.
   
 0.687
PBANKA_1323300
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
 0.673
PBANKA_0517400
Pre-mRNA-splicing factor CEF1, putative.
    
 0.666
PBANKA_1449400
Splicing factor 3B subunit 3, putative.
   
 0.665
PBANKA_1230500
RNA and export factor binding protein, putative.
   
 0.664
PBANKA_1036200
RNA-binding protein 8A, putative.
   
 0.658
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.