STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1447100CWC16 domain-containing protein, putative. (297 aa)    
Predicted Functional Partners:
PBANKA_0406800
Pre-mRNA-processing factor 19, putative.
    
   0.983
PBANKA_1202200
U5 small nuclear ribonucleoprotein component, putative.
  
 
   0.979
PBANKA_1435300
Pre-mRNA-processing factor 17, putative.
    
   0.977
PBANKA_0517400
Pre-mRNA-splicing factor CEF1, putative.
    
   0.975
PBANKA_0101200
Elongation factor G, putative.
    
   0.513
PBANKA_1314800
Elongation factor 2, putative.
    
   0.513
PBANKA_1447700
Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.
    
   0.513
PBANKA_1361100
Elongation factor Tu, putative.
    
   0.513
PBANKA_0827700
Replication termination factor, putative.
      
 0.501
PBANKA_1237500
Pre-mRNA-splicing factor BUD31, putative.
    
 
 0.411
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.