STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBANKA_1354000RNA lariat debranching enzyme, putative. (455 aa)    
Predicted Functional Partners:
PBANKA_1140200
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative.
    
 
 0.793
PBANKA_1036200
RNA-binding protein 8A, putative.
 
      0.596
PBANKA_0818600
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43, putative.
    
 
 0.585
PBANKA_1137800
Glideosome-associated connector.
      
 0.579
PBANKA_1424800
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
      
 0.493
PBANKA_0823600
Pre-mRNA-splicing factor 18, putative.
    
 
 0.461
PBANKA_1435600
Debranching enzyme-associated ribonuclease, putative.
   
  
 0.441
PBANKA_1450500
Pre-mRNA-splicing factor SYF1, putative.
   
  
 0.414
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.