STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_0008KEGG: ccs:CCNA_03864 cytosolic protein. (150 aa)    
Predicted Functional Partners:
Hbal_1382
PFAM: SmpA/OmlA domain protein; KEGG: ccs:CCNA_01427 lipoprotein, SmpA/OmlA family.
  
     0.770
Hbal_0984
KEGG: pzu:PHZ_c3163 hypothetical protein.
  
     0.764
Hbal_2956
TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; KEGG: pla:Plav_2069 RpsU-divergently transcribed protein.
  
     0.752
leuS
TIGRFAM: leucyl-tRNA synthetase; KEGG: ccs:CCNA_03865 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.735
Hbal_1954
PFAM: Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone; KEGG: cak:Caul_2497 pyrrolo-quinoline quinone.
  
    0.727
Hbal_0005
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: pla:Plav_1278 DNA polymerase III subunit delta.
 
     0.726
Hbal_0484
Penicillin-binding protein 2; KEGG: pla:Plav_2482 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
     0.720
Hbal_1931
PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pzu:PHZ_c1708 peptidyl-prolyl cis-trans isomerase family protein.
  
   
 0.707
rnpA
Hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.704
Hbal_2339
KEGG: pzu:PHZ_c0201 hypothetical protein.
  
     0.679
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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